Updated Oct 2022
WHAT IS THE OMICRON VARIANT AND WHY IS IT ONE OF THE VARIANTS OF CONCERN (VOC)?
Omicron (scientific name B.1.1.529) is the new COVID variant, first detected and reported in Botswana and South Africa in November 2021, when a sudden exponential (5-fold) rise in daily cases was seen over a short period of a week. It is a highly mutated variant with around 50 mutations in total out of which some 30 mutations are in the spike (S) proteins which are the important surface proteins helping the coronavirus to enter human body cells. This makes the Omicron variant highly transmissible and very fast spreading. Therefore, WHO classifies it as a variant of concern (VOC) on 26th November 2021.
For a comparison with the other VOC, the Delta variant, largely responsible for the second COVID wave in various parts of the world including India, had around 17 mutations with 9 on the spike protein. The Omicron strain is now present in almost all countries globally. Due to the fast spread of this strain, Omicron has become the dominant COVID variant across the world in a short time.
Omicron subvariants are now seen circulating in many parts of the world. BA.2 was identified in India, USA, UK, and some countries in Europe. It has been called ‘stealth Omicron’ by some. It spreads faster and has replaced the original Omicron variant (now called BA.1) as the dominant strain in USA, EU, UK, India, and several other parts of the world, including Asia and Africa. Since then, BA.2 has continued mutating and many of its sub-lineages are under monitoring, like BA.2.3.20, BA.2.75 and BJ.1. The sub-lineage BA.2.75 is gaining dominance in many countries including India. All these sub-lineages are being studied for their infectivity and immune escape.
In Jan 2022, BA.3 variant was also found in South Africa but that showed fewer mutations than BA.1 and is likely less infective or transmissible. BA.4 and BA.5 variants detected in South Africa in April 2022, and now in many other parts of the world including USA, EU, UK, and India, are also being tracked by the WHO. Sub-lineages of BA.4 (BA.4.6), and BA.5 (BF.7 and BQ.1), are under monitoring by WHO. BQ.1 is now dominant in USA and was also detected in India. BF.7 was detected in October 2022 in China, and then in India, and is spreading in EU.
Recombinant variants have been seen since Jan 2022. A recombinant variant occurs when an individual becomes infected with two or more variants at the same time, leading to a mixing of genetic material in the human body. Prominent among these is XE, a combination of BA.1 and BA.2 strains of Omicron detected in UK. Recombinants of Delta and BA.1 (XF and XD) have also been seen in a few cases but not showing community transmission yet. It is still to be ascertained if XE is more virulent, however, it has been estimated to be 10% more transmissible than the BA.2 strain. A recombinant of BA.2.75 and BJ.1 has also been seen called XBB.
Omicron and its subvariants have been driving the waves of COVID in 2022 in many countries.
DOES OMICRON HAVE DIFFERENT SYMPTOMS THAN EARLIER COVID VARIANTS?
The symptoms of the Omicron variant can vary from person to person. Typical symptoms of loss of smell or taste that are seen with other COVID variants are usually absent. Often people infected with the Omicron variant may be completely asymptomatic and diagnosed incidentally due to travel requirements and contact tracing.
The symptoms of the Omicron variant can include:
- fatigue and weakness
- irritation or scratchy feeling in the throat, with or without dry cough
- common cold symptoms like runny nose, sneezing, and congestion
- body ache, low backache
- mild fever, sometimes with chills/night sweats
- nausea, vomiting, loss of appetite
DOES OMICRON CAUSE MORE SEVERE COVID, AND INCREASE COMPLICATIONS OR DEATH RISK COMPARED TO EARLIER COVID VARIANTS?
Even though this variant spreads fast and therefore most countries are likely to witness a rapid rise in cases, the evidence so far suggests that the Omicron variant does not cause more severe disease, complications, hospitalization, or death as compared to previous COVID variants. This variant impacts the upper respiratory tract and has not been commonly observed to affect the lower airway, lung, or blood vessels. Most cases are mild and managed with home isolation and basic health care.
People with comorbidities should take care that they take their medicines regularly. Improving general health and well-being, and completing COVID vaccination are recommended. More evidence and research are awaited regarding the expected severity, long-term effects, and impact on the healthcare resources of the Omicron variant.
DO THE CURRENT AVAILABLE VACCINES PROTECT FROM COVID CAUSED BY OMICRON?
A decrease in the effectiveness of vaccines or evasion of immunity acquired through vaccination or previous COVID infection is a point of concern with the Omicron variant. Infections in fully vaccinated people (called ‘vaccine breakthrough’) and in previously infected people (re-infections) have been seen. This was also seen with the other VOC.
Vaccination and natural infection lead to the formation of neutralizing antibodies (humoral immunity) in the body. Most vaccines target the S protein therefore mutations in the variants can reduce the ability of the antibodies acquired earlier to target and kill the virus. However, immunity also comprises the cell-mediated component, called the T-cell response (white blood cells directly targeting and killing the virus). This continues to give longer protection even when neutralizing antibodies are rendered ineffective or reduced over time.
Therefore, as of now vaccination against COVID with any of the existing COVID vaccines remains the best way of protection against severe COVID, its complications, hospitalization, and death. It is important for everyone eligible to take both doses of the COVID vaccine available in their country. There is still more research needed on whether booster doses add value in protection against COVID variants, though most countries are administering boosters.
In August 2022, bivalent updated mRNA COVID vaccines that target both the original COVID strain and the Omicron strains (BA.1 or BA.4/BA.5) have been developed and approved. There is also evidence that the hybrid immunity of natural infection and vaccine-induced immunity continue to provide protection from the Omicron variant as well.
HOW IS THE OMICRON VARIANT DETECTED?
Omicron is detected by the RT-PCR test followed by genome sequencing to confirm the variant. The RT-PCR should test multiple genes including N (nucleocapsid), RdRp (RNA dependent RNA polymerase), and E (envelope), in addition to S (spike protein), as S protein ‘drop out’ is suggestive of a variant. Specific RT-PCR tests for Omicron have also been approved and launched in some countries. (like OmiSure and Krivida in India).
People with symptoms of Omicron infection should be tested for implementing timely isolation. Household contacts of a positive case who are symptomatic, or have comorbidities and are at high risk, should also be tested.
In early 2022, when Omicron was spreading fast, travel regulations had been imposed. International travelers had to carry a pre-departure RT-PCR report to be checked at the travel destination. RT-PCR was also being done by many countries on arrival. If negative, home quarantine of 7 days (may vary depending on the destination country/state guidelines) was advised with monitoring for symptoms. Repeat testing to confirm negative status was usually done on day 8, followed by another week of self-monitoring for symptoms.
People who test positive are to be immediately isolated, and the sample sent for gene sequencing to confirm Omicron. Thereafter such people are treated by institutional or home isolation in accordance with the regional administrative policies, till they test negative. It is advisable to check the COVID travel and testing guidelines of the individual country to which one is planning to travel.
With the drop in cases and easing of curbs, from Apr-May 2022, most countries have already done away or are in the process of doing away with mandatory testing for fully vaccinated people.
WHAT IS THE TREATMENT FOR COVID CAUSED BY THE OMICRON VARIANT?
COVID treatment protocols are to be followed for the disease caused by the Omicron variant. If a person has symptoms, they are mostly mild and are treated with home isolation, rest, and a nutritious diet. Medicines like paracetamol for the symptoms of fever, body ache, and headache can be taken. Warm fluids and antiseptic gargles for throat irritation, steam and saline drops for nasal congestion, and multivitamins for general health may also be taken.
The need and effectiveness of existing or new approved antivirals (like molnupiravir), as well as the antibody cocktail, are not yet established for the Omicron variant. These may only be considered by medical practitioners in high-risk cases, with significant comorbidities or in those not vaccinated. For the majority of cases, these medicines are not required and should not be indiscriminately used. Antibiotics (like azithromycin etc.) are also not required in most cases and should not be used without a medical prescription or established need.
Oxygen monitoring and watching out for red flag (alarm) signs continue to be recommended throughout the symptomatic phase. Hospitalization should only be considered after discussion with the treating physician if the following alarm signs develop:
- oxygen saturation being <94% over 3 readings in a single day or falling below 90% anytime
- development of breathlessness or chest pain/pressure
- >3 days of high fever not responding to medication
- severe weakness and fatigue preventing self-monitoring or care
- inability to eat or take medicines orally
- mental confusion or altered consciousness
- comorbidities are uncontrolled or worsening.
Self-isolation is recommended for 7 days after symptom-onset or following a positive test, and till there is no fever for 3 consecutive days. This is to be followed by a week of self-monitoring of symptoms and mask wear when near others or when in public spaces. No re-testing is needed after the isolation period is over. The 7-day isolation is based on that being the period of the person shedding the virus and being infective. However, symptoms like weakness, fatigue, throat irritation, dry cough, nasal congestion, headache, and indigestion may sometimes continue longer, and subside more gradually.
IS THERE REASON TO PANIC? HOW CAN WE PROTECT OURSELVES DURING THE 3RD AND SUBSEQUENT WAVES?
It is natural for viruses to keep mutating. There is no need to panic, spread fear, or overreact in terms of restrictions or disrupting life.
It is likely that the Omicron variant will infect the majority of the population in many countries. It is important to know that the Omicron variant seems to cause mild disease, and its fast and vast spread may actually help by replacing the more severe Delta variant. However, research on its long-term effects is still ongoing.
The Omicron variant is spreading rapidly across several countries including India constituting the ‘3rd wave’ of COVID. Many countries have already crossed the peak and are showing a decline in cases, while some are still in the rising phase of the wave. Hospitalization rates have been seen to be far less than previous variants of concern, and are not showing a concerning rise or trend. Mortality has been extremely low and mostly due to other associated uncontrolled comorbidities. However, the load on healthcare systems can be significant when the spread becomes huge impacting different people with comorbidities, unknown health status, and limited healthcare access, especially in highly populated countries with unevenly distributed health resources. The relative protection of different vaccines is also still not ascertained and is being studied. Therefore, the health administration in most countries is playing on the side of caution. Though gradually curbs have been relaxed and most public places and activities have opened up, it is still advisable to keep the following in mind in case there is still a significant or increasing number of COVID cases in your area:
- Continue SMS – social distancing, mask in public places, and sanitizing frequently, as much as possible.
- Complete the COVID vaccination course of the vaccine available in one’s country.
- Test in case suggestive symptoms are present and in accordance with travel norms mentioned.